BLAT Citations
In the short time since BLAT was published in April, 2002, this powerful piece of software has become an integral part of the international scientific community's research into biology, genomics, biotechnology, and related fields.
Here is a list of BLAT citations, current as of March 30, 2003. (Source: ISI Web of Knowledge.)
- Loraine AE, Helt GA, Visualizing the genome: techniques for presenting human genome data and annotations, BMC BIOINFORMATICS 3: art. no. 19 2002
- Hedenfalk I, Ringner M, Ben-Dor A, et al., Molecular classification of familial non-BRCA1/BRCA2 breast cancer, P NATL ACAD SCI USA 100 (5): 2532-2537 MAR 4 2003
- Badano JL, Ansley SJ, Leitch CC, et al., Identification of a novel Bardet-Biedl syndrome protein, BBS7, that shares structural features with BBS1 and BBS2, AM J HUM GENET 72 (3): 650-658 MAR 2003
- Mathews LM, Chi SY, Greenberg N, et al., Large differences between LINE-1 amplification rates in the human and chimpanzee lineages, AM J HUM GENET 72 (3): 739-748 MAR 2003
- Karolchik D, Baertsch R, Diekhans M, et al., The UCSC Genome Browser Database, NUCLEIC ACIDS RES 31 (1): 51-54 JAN 1 2003
- Harris TW, Lee R, Schwarz E, et al., WormBase: a cross-species database for comparative genomics, NUCLEIC ACIDS RES 31 (1): 133-137 JAN 1 2003
- Safran M, Chalifa-Caspi V, Shmueli O, et al., Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE, NUCLEIC ACIDS RES 31 (1): 142-146 JAN 1 2003
- White SN, Kata SR, Womack JE, Comparative fine maps of bovine toll-like receptor 4 and toll-like receptor 2 regions, MAMM GENOME 14 (2): 149-155 FEB 2003
- Egland KA, Vincent JJ, Strausberg R, et al., Discovery of the breast cancer gene BASE using a molecular approach to enrich for genes encoding membrane and secreted proteins, P NATL ACAD SCI USA 100 (3): 1099-1104 FEB 4 2003
- Chuang TJ, Lin WC, Lee HC, et al., A complexity reduction algorithm for analysis and annotation of large genomic sequences, GENOME RES 13 (2): 313-322 FEB 2003
- Mootha VK, Lepage P, Miller K, et al., Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics, P NATL ACAD SCI USA 100 (2): 605-610 JAN 21 2003
- Heilig R, Eckenberg R, Petit JL, et al., The DNA sequence and analysis of human chromosome 14, NATURE 421 (6923): 601-U1 FEB 6 2003
- Hardison RC, Roskin KM, Yang S, et al., Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution, GENOME RES 13 (1): 13-26 JAN 2003
- Collins JE, Goward ME, Cole CG, et al., Reevaluating human gene annotation: A second-generation analysis of chromosome 22, GENOME RES 13 (1): 27-36 JAN 2003
- Pevzner P, Tesler G, Genome Rearrangements in mammalian evolution: Lessons from human and mouse genomes, GENOME RES 13 (1): 37-45 JAN 2003
- Schwartz S, Kent WJ, Smit A, et al., Human-mouse alignments with BLASTZ, GENOME RES 13 (1): 103-107 JAN 2003
- Bera TK, Zimonjic DB, Popescu NC, et al., POTE, a highly homologous gene family located on numerous chromosomes and expressed in prostate, ovary, testis, placenta, and prostate cancer, P NATL ACAD SCI USA 99 (26): 16975-16980 DEC 24 2002
- Geraghty DE, Daza R, Williams LM, et al., Genetics of the immune response: identifying immune variation within the MHC and throughout the genome, IMMUNOL REV 190 (1): 69-85 DEC 2002
- Dehal P, Satou Y, Campbell RK, et al., The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins, SCIENCE 298 (5601): 2157-2167 DEC 13 2002
- Rouchka EC, Gish W, States DJ, Comparison of whole genome assemblies of the human genome, NUCLEIC ACIDS RES 30 (22): 5004-5014 NOV 15 2002
- Okazaki Y, Furuno M, Kasukawa T, et al., Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs, NATURE 420 (6915): 563-573 DEC 5 2002
- Katsanis N, Worley KC, Gonzalez G, et al., A computational/functional genomics approach for the enrichment of the retinal transcriptome and the identification of positional candidate retinopathy genes, P NATL ACAD SCI USA 99 (22): 14326-14331 OCT 29 2002
- Cox LA, Birnbaum S, Vandeberg JL, Identification of candidate genes regulating HDL cholesterol using a chromosomal region expression array, GENOME RES 12 (11): 1693-1702 NOV 2002
- Inoue K, Osaka H, Thurston VC, et al., Genomic rearrangements resulting in PLP1 deletion occur by nonhomologous end joining and cause different dysmyelinating phenotypes in males and females, AM J HUM GENET 71 (4): 838-853 OCT 2002
- Carrasquillo MM, McCallion AS, Puffenberger EG, et al., Genome-wide association study and mouse model identify interaction between RET and EDNRB pathways in Hirschsprung disease, NAT GENET 32 (2): 237-244 OCT 2002
- Wolfsberg TG, Wetterstrand KA, Guyer MS, et al., A user's guide to the human genome, NAT GENET 32: 4-79 Suppl. S SEP 2002
- Gregory SG, Sekhon M, Schein J, et al., A physical map of the mouse genome, NATURE 418 (6899): 743-U3 AUG 15 2002
- Kent WJ, Sugnet CW, Furey TS, et al., The human genome browser at UCSC, GENOME RES 12 (6): 996-1006 JUN 2002